FlowSOM clustering - A novel pattern recognition approach for water research: Application to a hyper-arid coastal aquifer system.

Monitoring and understanding of water resources have become essential in designing effective and sustainable management strategies to overcome the growing water quality challenges. In this context, the utilization of unsupervised learning techniques for evaluating environmental tracers has facilitated the exploration of sources and dynamics of groundwater systems through pattern recognition. However, conventional techniques may overlook spatial and temporal non-linearities present in water research data. This paper introduces the adaptation of FlowSOM, a pioneering approach that combines self-organizing maps (SOM) and minimal spanning trees (MST), with the fast-greedy network clustering algorithm to unravel intricate relationships within multivariate water quality datasets. By capturing connections within the data, this ensemble tool enhances clustering and pattern recognition. Applied to the complex water quality context of the hyper-arid transboundary Caplina/Concordia coastal aquifer system (Peru/Chile), the FlowSOM network and clustering yielded compelling results in pattern recognition of the aquifer salinization. Analyzing 143 groundwater samples across eight variables, including major ions, the approach supports the identification of distinct clusters and connections between them. Three primary sources of salinization were identified: river percolation, slow lateral aquitard recharge, and seawater intrusion. The analysis demonstrated the superiority of FlowSOM clustering over traditional techniques in the case study, producing clusters that align more closely with the actual hydrogeochemical pattern. The outcomes broaden the utilization of multivariate analysis in water research, presenting a comprehensive approach to support the understanding of groundwater systems.

Seawater intrusion pattern recognition supported by unsupervised learning: A systematic review and application.

Seawater intrusion is among the world's leading causes of groundwater contamination, as salty water can affect potable water access, food production, and ecosystem functions. To explore such contamination sources, multivariate analysis supported by unsupervised learning tools has been used for decades to aid in water resource pattern recognition, clustering, and water quality data variability characterization. This study proposes a systematic review of these techniques applied for supporting seawater intrusion identification based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement and subsequent bibliometric analysis of 102 coastal hydrogeological studies. The most relevant identified methods, including principal components analysis (PCA), hierarchical clustering analysis, K-means clustering, and self-organizing maps, are explained and applied to a case study. Although 74 % of the studies that applied dimensional reduction methods, such as PCA, associated most of the database variance with the salinization process, 77 % of the studies that applied clustering methods associated at least one water sample cluster with the influence of seawater intrusion. Based on the review and a practical demonstration using the open-source R software platform, recommendations are made regarding data preprocessing, research opportunities, and publishing information necessary to replicate and validate the studies.

Predicting adverse scenarios for a transboundary coastal aquifer system in the Atacama Desert (Peru/Chile).

The Caplina/Concordia transboundary coastal aquifer system, located in the Atacama Desert, is the primary source of water supply for domestic use and irrigation for La Yarada-Los Palos (Peru) and Concordia (Chile) agriculture districts, and to a lesser extent, for Tacna province public supply use (Peru). Despite the scarce amount of rainfall (<20 mm/year) in the area and the limited recharge coming from the Andean highlands, this transboundary aquifer system has been overexploited mainly for agriculture since before the 2000s on the Peruvian side. Consequently, this has caused groundwater depletion and seawater intrusion. In this study, comprehensive hydrogeological information was integrated to understand the aquifer system's behavior and the effects to which it has been subjected to groundwater overexploitation. To that end, a 3D hydrogeological framework was developed using the LEAPFROG software and a constant-density groundwater flow model with equivalent heads was generated in FEFLOW software, which was adjusted with Monte Carlo analysis and conventional automated calibration. Finally, eight scenarios, considering various water resource management options proposed by the authority and potential climatic trends (CMIP6), were simulated from 2020 to 2040. The results showed that between 2002 and 2020, the increase in the seawater wedge and the average groundwater level decline were 216 hm3/year and 7 m, respectively. It is expected that the depletion will continue with a groundwater level decline between 5 and 8 m and an increase in the seawater wedge between 1120 hm3/year and 1175 hm3/year for the forecast period. The study concludes that the aquifer system will remain unsustainable for the next 20 years, regardless of the selected scenarios, and suggests that any mitigation measure requires the participation of stakeholders from Peru, Chile, and Bolivia.

Flow ventricular catheters for shunted hydrocephalus: initial clinical results.

BACKGROUND: The non-homogenous flow of the cerebrospinal fluid within the ventricular catheter is one of the causative factors in shunt obstructions during the treatment of hydrocephalus. Previously, we studied the flow in ventricular catheters under the steady and pulsatile boundary conditions by means of computational fluid dynamics (CFD) in three-dimensional paradigms. Subsequently, several catheter designs with homogeneous flow patterns were developed out of which one prototype was chosen after a validation study. OBJECTIVE: To test the effectiveness of the flow ventricular catheter in a prospective, multicenter, comparative study. METHODS: Eligible centers were three pediatric hospitals: two with sole adult practice and one a mixed pediatric-adult. Standard silicone material was used to develop a parametric catheter model with homogenous flow characteristics. The flow catheters were inserted in pediatric (n = 30) and adult (n = 10) patients with all types of hydrocephalus. Simultaneously, regular ventricular catheters were inserted in another 43 control patients in the participating centers. Catheter positioning was standardized according to the Schaumann and Thomale classification. RESULTS: All ventricular catheters had a cephalad grade I or II positioning, and caudally, its extension had a peritoneal location. Programmable valves were utilized in 70% and antisiphon devices in 20% of the cases. Regular differential pressure valves were utilized in the remaining. No case of flow catheter obstruction was identified during a mean follow-up period of 2 years at the time of this writing. There were four catheter obstructions in the control cohort, all pediatric cases, during the first year. Shunt infections occurred in two cases in the control group, while there was one recurrent case of adult ventriculitis in the flow catheter group. CONCLUSIONS: This prototype model represents the next generation of ventricular catheters with a homogeneous flow pattern. The flow catheter can be inserted safely in hydrocephalic patients, and this preliminary prospective comparative study showed a possible obstruction-free functionality.

Transición epitelio mesénquima: de lo molecular a lo fisiológico / Epitelial Mesenchymal Transition: From the Molecular to Physiologic

La transición epitelio mesénquima (EMT) es un proceso compuesto de diferentes fases, donde una célula epitelial adquiere un fenotipo mesenquimal. Dentro de los cambios involucrados se encuentran: pérdida de la polaridad celular, adquisición de una capacidad migratoria, capacidad invasora, resistencia a la apoptosis y aumento en la producción de componentes de la matriz extracelular. Todos estos cambios ocurren como una consecuencia de la activación y represión de genes involucrados con rutas de señalización específicas relacionadas con este evento. La EMT está relacionada con procesos fisiológicos y patológicos como el cáncer. Consta de tres fases: una de células no migratorias, células premigratorias y células migratorias; cada una de ellas producto de diferentes señales intra o extracelulares, factores de transcripción (TGF-B, Snail, TWIST, Sox, Slug, ZEB1, entre otras) y proteínas involucradas (E-cadherina, integrina, vimentina, ocludinas y claudinas).

Transition mesenchymal epithelium (EMT) is a process composed of different phases where an epithelial cell acquires a mesenchymal phenotype. Among the changes involved are: loss of cellular polarity, acquisition of a migratory capacity, invasive capacity, resistance to apoptosis, and increase in the production of components of the extracellular matrix. All these changes occur as a consequence of the activation and repression of genes involved with specific signaling pathways related to this event. EMT is related to physiological and pathological processes such as cancer. It consists of three phases: A phase of non-migratory cells, pre-migratory cells and migratory cells; (TGF-B, Snail, TWIST, Sox, Slug, ZEB1 among others), and proteins involved (E-cadherin, integrin, vimentin, occludins and claudins).

Chronic non-invasive corticosterone administration abolishes the diurnal pattern of tph2 expression.

Both hypothalamic-pituitary-adrenal (HPA) axis activity and serotonergic systems are commonly dysregulated in stress-related psychiatric disorders. We describe here a non-invasive rat model for hypercortisolism, as observed in major depression, and its effects on physiology, behavior, and the expression of tph2, the gene encoding tryptophan hydroxylase 2, the rate-limiting enzyme for brain serotonin (5-hydroxytryptamine; 5-HT) synthesis. We delivered corticosterone (40 µg/ml, 100 µg/ml or 400 µg/ml) or vehicle to adrenal-intact adult, male rats via the drinking water for 3 weeks. On days 15, 16, 17 and 18, respectively, the rats' emotionality was assessed in the open-field (OF), social interaction (SI), elevated plus-maze (EPM), and forced swim tests (FST). On day 21, half of the rats in each group were killed 2h into the dark phase of a 12/12 h reversed light/dark cycle; the other half were killed 2h into the light phase. We then measured indices of HPA axis activity, plasma glucose and interleukin-6 (IL-6) availability, and neuronal tph2 expression at each time point. Chronic corticosterone intake was sufficient to cause increased anxiety- and depressive-like behavior in a dose-dependent manner. It also disrupted the diurnal pattern of plasma adrenocorticotropin (ACTH), corticosterone, and glucose concentrations, caused adrenal atrophy, and prevented regular weight gain. No diurnal or treatment-dependent changes were found for plasma concentrations of IL-6. Remarkably, all doses of corticosterone treatment abolished the diurnal variation of tph2 mRNA expression in the brainstem dorsal raphe nucleus (DR) by elevating the gene's expression during the animals' inactive (light) phase. Our data demonstrate that chronic elevation of corticosterone creates a vulnerability to a depression-like syndrome that is associated with increased tph2 expression, similar to that observed in depressed patients.